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Flights from El Nido to Cebu

Book direct flights from El Nido to Cebu: One way flights from $101, round trip flights from $102. Find flight deals for the next 3 months below.

      • Cheapest nonstop
        ENI 10:05 PM
        1h 45m
        Nonstop
        CEB 11:50 PM
        El Nido - Cebu | Thu, May 28 | Cebgo
        CEB 6:50 PM
        1h 45m
        Nonstop
        ENI 8:35 PM
        Cebu - El Nido | Sun, May 31 | Cebgo
        $102 $318
        68% off
        68% off
        $318 $102
      • ENI 10:40 PM
        1h 45m
        Nonstop
        CEB 12:25 AM
        El Nido - Cebu | Mon, Jun 8 | Cebgo
        CEB 4:30 PM
        1h 45m
        Nonstop
        ENI 6:15 PM
        Cebu - El Nido | Wed, Jun 10 | Cebgo
        $210 $318
        34% off
        34% off
        $318 $210
      • ENI 10:40 PM
        1h 45m
        Nonstop
        CEB 12:25 AM
        El Nido - Cebu | Wed, Jun 3 | Cebgo
        CEB 12:50 PM
        7h 5m
        1 stop
        ENI 7:55 PM
        Cebu - El Nido | Sat, Jun 6 | Cebu Pacific
        $157 $318
        51% off
        51% off
        $318 $157
      • ENI 7:45 AM
        9h 55m
        1 stop
        CEB 5:40 PM
        El Nido - Cebu | Thu, May 28 | AirSWIFT AirLine
        CEB 6:50 PM
        1h 45m
        Nonstop
        ENI 8:35 PM
        Cebu - El Nido | Sun, May 31 | Cebgo
        $158
        50% off
        $318 $158
      • ENI 7:55 PM
        5h 15m
        1 stop
        CEB 1:10 AM
        El Nido - Cebu | Tue, Jun 2 | Cebgo
        CEB 7:35 AM
        6h 25m
        1 stop
        ENI 2:00 PM
        Cebu - El Nido | Fri, Jun 5 | Cebgo
        $161
        49% off
        $318 $161
      • ENI 6:05 PM
        7h 5m
        1 stop
        CEB 1:10 AM
        El Nido - Cebu | Tue, Jun 2 | AirSWIFT AirLine
        CEB 7:35 AM
        6h 25m
        1 stop
        ENI 2:00 PM
        Cebu - El Nido | Fri, Jun 5 | Cebgo
        $198
        38% off
        $318 $198
      • ENI 7:05 AM
        10h 35m
        1 stop
        CEB 5:40 PM
        El Nido - Cebu | Thu, Jun 4 | Cebgo
        CEB 7:35 AM
        6h 25m
        1 stop
        ENI 2:00 PM
        Cebu - El Nido | Mon, Jun 8 | Cebgo
        $216
        32% off
        $318 $216
      • ENI 7:00 PM
        6h 10m
        1 stop
        CEB 1:10 AM
        El Nido - Cebu | Sat, Jun 20 | Cebgo
        CEB 12:50 PM
        5h 50m
        1 stop
        ENI 6:40 PM
        Cebu - El Nido | Thu, Jun 25 | Cebu Pacific
        $221
        31% off
        $318 $221
      • ENI 6:05 PM
        7h 5m
        1 stop
        CEB 1:10 AM
        El Nido - Cebu | Sat, Jun 20 | AirSWIFT AirLine
        CEB 12:50 PM
        5h 50m
        1 stop
        ENI 6:40 PM
        Cebu - El Nido | Thu, Jun 25 | Cebu Pacific
        $221
        31% off
        $318 $221
      • ENI 6:50 AM
        1h 50m
        Nonstop
        CEB 8:40 AM
        El Nido - Cebu | Thu, Jun 4 | AirSWIFT AirLine
        CEB 7:35 AM
        6h 25m
        1 stop
        ENI 2:00 PM
        Cebu - El Nido | Mon, Jun 8 | Cebgo
        $222
        30% off
        $318 $222
      • ENI 1:00 PM
        17h 25m
        1 stop
        CEB 2:00 PM
        El Nido - Cebu | Tue, May 12 | Normal Airline
        CEB 3:00 PM
        6h
        Nonstop
        ENI 4:00 PM
        Cebu - El Nido | Thu, May 14 | Normal Airline
        Find more flights
        Find more flights
      • Cheapest nonstop
        ENI 4:40 PM
        1h 45m
        Nonstop
        CEB 6:25 PM
        El Nido - Cebu | Sun, Jun 14 | Cebgo
        $101 $150
        33% off
        33% off
        $150 $101
      • ENI 10:40 PM
        1h 45m
        Nonstop
        CEB 12:25 AM
        El Nido - Cebu | Wed, May 20 | Cebgo
        $104 $150
        31% off
        31% off
        $150 $104
      • ENI 12:20 PM
        5h
        1 stop
        CEB 5:20 PM
        El Nido - Cebu | Sat, Jun 27 | AirSWIFT AirLine
        $95 $150
        37% off
        37% off
        $150 $95
      • ENI 5:25 PM
        7h 45m
        1 stop
        CEB 1:10 AM
        El Nido - Cebu | Thu, Jun 4 | AirSWIFT AirLine
        $96
        36% off
        $150 $96
      • ENI 12:20 PM
        5h 50m
        1 stop
        CEB 6:10 PM
        El Nido - Cebu | Sun, Jul 5 | AirSWIFT AirLine
        $98
        35% off
        $150 $98
      • ENI 2:25 PM
        21h
        1 stop
        CEB 11:25 AM
        El Nido - Cebu | Thu, Jun 18 | AirSWIFT AirLine
        $100
        33% off
        $150 $100
      • ENI 1:50 PM
        7h 10m
        1 stop
        CEB 9:00 PM
        El Nido - Cebu | Mon, Jul 6 | AirSWIFT AirLine
        $100
        33% off
        $150 $100
      • ENI 12:20 PM
        5h 50m
        1 stop
        CEB 6:10 PM
        El Nido - Cebu | Tue, Jun 16 | AirSWIFT AirLine
        $102
        32% off
        $150 $102
      • ENI 8:20 PM
        4h 50m
        1 stop
        CEB 1:10 AM
        El Nido - Cebu | Sat, Jun 13 | AirSWIFT AirLine
        $103
        31% off
        $150 $103
      • ENI 11:50 AM
        23h 25m
        1 stop
        CEB 11:15 AM
        El Nido - Cebu | Sat, Jun 20 | AirSWIFT AirLine
        $105
        30% off
        $150 $105
      • ENI 1:00 PM
        17h 25m
        1 stop
        CEB 2:00 PM
        El Nido - Cebu | Tue, May 12 | Normal Airline
        Find more flights
        Find more flights

Displayed flight fares from El Nido to Cebu are based on average prices across airlines for the next 3 months, according to the latest Trip.com database.

Trip.com price insights on flights from El Nido to Cebu

Which month has the cheapest one-way flights from to Cebu?

The average price of one-way flights from to Cebu purchased by Trip.com users by month over the past 12 months.

Based on Trip.com’s data, the cheapest month for flights from to Cebu is October, with an average price of $147; while the month with the highest flight price is usually June, with an average price of up to $197.

$197
$172
$147
$122
    Cheapest
  • $185
    May
  • $197
    Jun
  • $187
    Jul
  • $175
    Aug
  • $154
    Sep
  • $147
    Oct
  • $157
    Nov
  • $161
    Dec
  • $153
    Jan
  • $173
    Feb
  • $175
    Mar
  • $192
    Apr

When is the cheapest day to fly from El Nido to Cebu during Memorial Day?

Data is based on the lowest one-way price from El Nido to Cebu during Memorial Day on Trip.com in the past 3 days.

Memorial Day is scheduled for May 25. The cheapest flights from El Nido to Cebu are available on May 27, with fares starting at $110.

$172
$141
$110
$79
    Cheapest
  • $152
    21
    May
  • $137
    22
  • $172
    23
  • $163
    24
  • $111
    25
  • $138
    26
  • $110
    27

Frequently Asked Questions

  • What are the cheapest flights from El Nido to Cebu (ENI-CEB)?

    Based on Trip.com data, AirSWIFT AirLine offers one-way fares as low as $95 on Cheapest nonstop routes (e.g. ENI to CEB on Sat, Jun 27), while Cebgo offers Cheapest nonstop round-trips from $102 departing on Thu, May 28 and returning on Sun, May 31.
  • At the moment, you can catch a nonstop flight from El Nido to Cebu with the following airlines, including: AirSWIFT AirLine Cebgo Selected airlines are based on historical data collected from flight bookings users made on Trip.com within the last 90 days.
  • It takes around 1 hour 46 minutes to fly from El Nido (ENI) to Cebu (CEB).
  • By analyzing data from all airlines on the Trip.com flight calendar, it looks like the best time to book a flight from El Nido to Cebu is around 40 days (6 weeks) in advance, and the best time to fly is usually on Tuesday, Wednesday, and Saturday. Tuesday typically offers the cheapest flights for departure, while Saturday offers the best return deals.
  • Based on Trip.com data in the past 4 weeks, there is 20 flight per week flying from El Nido to Cebu. You can check the weekly schedule for popular airlines on this route below: AirSWIFT AirLine: S/M/T/W/T/F/S -- T65336 (06:38) Cebgo: S/-/T/-/T/-/S -- DG6261 (22:35) Cebgo: S/M/T/W/T/F/S -- DG6255 (16:22)
  • To find best deals on flights from El Nido to Cebu, you can use various tools on Trip.com:
    · Be flexible with your travel dates to get the cheapest flight deal. Now the cheapest flight deal is on Sat, Jun 27, with one-way flights priced at just $95.
    · Compare airlines strategically. Budget carriers often provide the lowest base fares, while we found the most affordable airline currently operating on this route is Cebgo.
    · Set up price alerts to easily monitor ticket prices without having to check every day.
    · Check Trip.com flight deals and promo codes frequently.
    · Avoid peak season unless you book very early. It seems the peak season for Cebu travel is around July.
    · Get exclusive promo codes for Trip.com app users.
  • The cheapest months to fly from El Nido to Cebu is October, when demand for travel is lower.
  • After crunching the numbers on our May flight calendar, it's currently cheapest to fly from El Nido to Cebu on May 19, 2026 with Cebgo, with prices starting at $52.
  • You can land at any one of the following hubs in Cebu, with El Nido Airport to Mactan-Cebu International Airport (ENI-CEB) is by far the most common option on this route: Mactan-Cebu International Airport (CEB).
  • The time difference between Cebu and El Nido is 0h.
  • Tickets can only be changed or canceled if permitted by airline policy. To submit a change or cancellation request, go to the flight bookings page, select the option to change or cancel your booking, choose the relevant passengers and segment, and submit a request. Please note that additional charges may apply according to the airline ticket policy. However, if the flight has been rescheduled and you would like to change or cancel your ticket, you can submit an involuntary cancellation request. For more details about change and cancellation policies, please check the customer support pages.

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Note: Prices shown on this page are estimated lowest price and include all taxes and fees found in the last 24 hours.

Book with no extra fees

Prices displayed in this page are all-inclusive prices (incl. taxes, fuel surcharge, civil aviation development fund, etc) with all fees confirmed before payment. Fees for luggage, meals, WLAN, or other additional services are also included as shown in the flight cards.

Real-time pricing updates

Prices, availability, and travel information on this page were updated within last 24 hours—even in real-time. The more popular the route, the more precise the data.

Change & Cancellation Policy

Trip.com displays flight cancellation and change policies for each flight ticket during the booking process, including fees and applicable conditions. Please check the following scenarios:
Voluntary cancellation/change:
To submit a change or cancellation request, go to the flight bookings page, select the option to change or cancel your booking, choose the relevant passengers and segment, and submit a request. Please note that additional charges may apply according to the airline ticket policy.
Cancellation/change due to a flight schedule change:
If the flight has been rescheduled and you would like to change or cancel your ticket, you can submit an involuntary cancellation request. For more details about change and cancellation policies, please check the customer support pages.