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Flights from Heraklion to Mykonos

Book direct flights from Heraklion to Mykonos: One way flights from $38, round trip flights from $64. Find flight deals for the next 3 months below.

      • Cheapest nonstop
        HER 7:10 PM
        50m
        Nonstop
        JMK 8:00 PM
        Heraklion - Mykonos | Tue, Jul 7 | AEGEAN
        JMK 7:00 PM
        1h
        Nonstop
        HER 8:00 PM
        Mykonos - Heraklion | Fri, Jul 10 | AEGEAN
        $64 $103
        38% off
        38% off
        $103 $64
      • HER 6:00 PM
        50m
        Nonstop
        JMK 6:50 PM
        Heraklion - Mykonos | Sun, Jul 5 | AEGEAN
        JMK 8:35 PM
        1h
        Nonstop
        HER 9:35 PM
        Mykonos - Heraklion | Tue, Jul 7 | AEGEAN
        $74 $103
        28% off
        28% off
        $103 $74
      • HER 5:35 PM
        50m
        Nonstop
        JMK 6:25 PM
        Heraklion - Mykonos | Fri, Jul 3 | AEGEAN
        JMK 7:00 PM
        1h
        Nonstop
        HER 8:00 PM
        Mykonos - Heraklion | Fri, Jul 10 | AEGEAN
        $77 $103
        25% off
        25% off
        $103 $77
      • HER 7:10 PM
        50m
        Nonstop
        JMK 8:00 PM
        Heraklion - Mykonos | Tue, Jul 21 | AEGEAN
        JMK 8:35 PM
        1h
        Nonstop
        HER 9:35 PM
        Mykonos - Heraklion | Tue, Jul 28 | AEGEAN
        $77
        25% off
        $103 $77
      • HER 7:10 PM
        50m
        Nonstop
        JMK 8:00 PM
        Heraklion - Mykonos | Tue, Jul 28 | AEGEAN
        JMK 7:00 PM
        1h
        Nonstop
        HER 8:00 PM
        Mykonos - Heraklion | Fri, Jul 31 | AEGEAN
        $81
        21% off
        $103 $81
      • HER 7:10 PM
        50m
        Nonstop
        JMK 8:00 PM
        Heraklion - Mykonos | Tue, Jul 14 | AEGEAN
        JMK 7:00 PM
        1h
        Nonstop
        HER 8:00 PM
        Mykonos - Heraklion | Fri, Jul 17 | AEGEAN
        $84
        18% off
        $103 $84
      • HER 6:00 PM
        50m
        Nonstop
        JMK 6:50 PM
        Heraklion - Mykonos | Sun, Jun 28 | AEGEAN
        JMK 7:00 PM
        1h
        Nonstop
        HER 8:00 PM
        Mykonos - Heraklion | Fri, Jul 3 | AEGEAN
        $85
        17% off
        $103 $85
      • HER 7:10 PM
        50m
        Nonstop
        JMK 8:00 PM
        Heraklion - Mykonos | Tue, Jun 16 | AEGEAN
        JMK 7:40 PM
        1h
        Nonstop
        HER 8:40 PM
        Mykonos - Heraklion | Sun, Jun 21 | AEGEAN
        $85
        17% off
        $103 $85
      • HER 5:35 PM
        50m
        Nonstop
        JMK 6:25 PM
        Heraklion - Mykonos | Fri, Jul 10 | AEGEAN
        JMK 8:35 PM
        1h
        Nonstop
        HER 9:35 PM
        Mykonos - Heraklion | Tue, Jul 14 | AEGEAN
        $86
        17% off
        $103 $86
      • HER 5:25 PM
        50m
        Nonstop
        JMK 6:15 PM
        Heraklion - Mykonos | Fri, Jul 17 | AEGEAN
        JMK 8:35 PM
        1h
        Nonstop
        HER 9:35 PM
        Mykonos - Heraklion | Tue, Jul 21 | AEGEAN
        $87
        16% off
        $103 $87
      • HER 1:00 PM
        17h 25m
        1 stop
        JMK 2:00 PM
        Heraklion - Mykonos | Sun, Jun 14 | Normal Airline
        JMK 3:00 PM
        6h
        Nonstop
        HER 4:00 PM
        Mykonos - Heraklion | Tue, Jun 16 | Normal Airline
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      • Cheapest nonstop
        HER 6:00 PM
        50m
        Nonstop
        JMK 6:50 PM
        Heraklion - Mykonos | Mon, Jun 15 | AEGEAN
        $38 $122
        69% off
        69% off
        $122 $38
      • HER 7:10 PM
        50m
        Nonstop
        JMK 8:00 PM
        Heraklion - Mykonos | Wed, Jun 24 | AEGEAN
        $41 $122
        66% off
        66% off
        $122 $41
      • HER 6:00 PM
        50m
        Nonstop
        JMK 6:50 PM
        Heraklion - Mykonos | Mon, Aug 10 | AEGEAN
        $52 $122
        56% off
        56% off
        $122 $52
      • HER 5:35 PM
        50m
        Nonstop
        JMK 6:25 PM
        Heraklion - Mykonos | Sat, Jun 20 | AEGEAN
        $60
        51% off
        $122 $60
      • HER 10:50 PM
        24h 15m
        1 stop
        JMK 11:05 PM
        Heraklion - Mykonos | Wed, Jun 24 | SKY express
        $79
        35% off
        $122 $79
      • HER 8:10 AM
        21h 15m
        1 stop
        JMK 5:25 AM
        Heraklion - Mykonos | Thu, Jun 18 | AEGEAN
        $83
        32% off
        $122 $83
      • HER 10:25 PM
        7h
        1 stop
        JMK 5:25 AM
        Heraklion - Mykonos | Thu, Jun 18 | SKY express
        $88
        28% off
        $122 $88
      • HER 10:50 PM
        9h 25m
        1 stop
        JMK 8:15 AM
        Heraklion - Mykonos | Mon, Aug 10 | SKY express
        $93
        24% off
        $122 $93
      • HER 11:30 PM
        5h 55m
        1 stop
        JMK 5:25 AM
        Heraklion - Mykonos | Sun, Aug 9 | SKY express
        $102
        16% off
        $122 $102
      • HER 8:10 AM
        21h 15m
        1 stop
        JMK 5:25 AM
        Heraklion - Mykonos | Fri, Jun 19 | AEGEAN
        $103
        16% off
        $122 $103
      • HER 1:00 PM
        17h 25m
        1 stop
        JMK 2:00 PM
        Heraklion - Mykonos | Sun, Jun 14 | Normal Airline
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        Find more flights

Displayed flight fares from Heraklion to Mykonos are based on average prices across airlines for the next 3 months, according to the latest Trip.com database.

Flight Info | Heraklion to Mykonos

The distance between Heraklion and Mykonos is approximately 233.47 km. It takes around 50 minutes on average to fly from Heraklion to Mykonos. Based on Trip.com's data travel demand peaks in January. The off-season for travel is October.

Cheapest one-way flight price$38
Cheapest round-trip ticket price$64
Off-season for travelOctober
Peak season for travelJanuary
Flight distance233.47 km
Average flight time50 minutes
Flight statistics for the Heraklion–Mykonos route are based on aggregated booking data from Trip.com over the past 12 months.

Frequently Asked Questions

  • What are the cheapest flights from Heraklion to Mykonos (HER-JMK)?

    Based on Trip.com data, AEGEAN offers one-way fares as low as $38 on Cheapest nonstop routes (e.g. HER to JMK on Mon, Jun 15), while AEGEAN offers Cheapest nonstop round-trips from $64 departing on Tue, Jul 7 and returning on Fri, Jul 10.
  • It takes around 50 minutes to fly from Heraklion (HER) to Mykonos (JMK).
  • By analyzing data from all airlines on the Trip.com flight calendar, it looks like the best time to book a flight from Heraklion to Mykonos is around 40 days (6 weeks) in advance, and the best time to fly is usually on Tuesday, Wednesday, and Saturday. Tuesday typically offers the cheapest flights for departure, while Saturday offers the best return deals.
  • To find best deals on flights from Heraklion to Mykonos, you can use various tools on Trip.com:
    · Be flexible with your travel dates to get the cheapest flight deal. Now the cheapest flight deal is on Mon, Jun 15, with one-way flights priced at just $38.
    · Compare airlines strategically. Budget carriers often provide the lowest base fares, while we found the most affordable airline currently operating on this route is AEGEAN.
    · Set up price alerts to easily monitor ticket prices without having to check every day.
    · Check Trip.com flight deals and promo codes frequently.
    · Avoid peak season unless you book very early. It seems the peak season for Mykonos travel is around January.
    · Get exclusive promo codes for Trip.com app users.
  • The cheapest months to fly from Heraklion to Mykonos is October, when demand for travel is lower.
  • After crunching the numbers on our June flight calendar, it's currently cheapest to fly from Heraklion to Mykonos on June 28, 2026 with AEGEAN, with prices starting at $85.
  • The time difference between Mykonos and Heraklion is 0h.
  • Tickets can only be changed or canceled if permitted by airline policy. To submit a change or cancellation request, go to the flight bookings page, select the option to change or cancel your booking, choose the relevant passengers and segment, and submit a request. Please note that additional charges may apply according to the airline ticket policy. However, if the flight has been rescheduled and you would like to change or cancel your ticket, you can submit an involuntary cancellation request. For more details about change and cancellation policies, please check the customer support pages.

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Note: Prices shown on this page are estimated lowest price and include all taxes and fees found in the last 24 hours.

Book with no extra fees

Prices displayed in this page are all-inclusive prices (incl. taxes, fuel surcharge, civil aviation development fund, etc) with all fees confirmed before payment. Fees for luggage, meals, WLAN, or other additional services are also included as shown in the flight cards.

Real-time pricing updates

Prices, availability, and travel information on this page were updated within last 24 hours—even in real-time. The more popular the route, the more precise the data.

Change & Cancellation Policy

Trip.com displays flight cancellation and change policies for each flight ticket during the booking process, including fees and applicable conditions. Please check the following scenarios:
Voluntary cancellation/change:
To submit a change or cancellation request, go to the flight bookings page, select the option to change or cancel your booking, choose the relevant passengers and segment, and submit a request. Please note that additional charges may apply according to the airline ticket policy.
Cancellation/change due to a flight schedule change:
If the flight has been rescheduled and you would like to change or cancel your ticket, you can submit an involuntary cancellation request. For more details about change and cancellation policies, please check the customer support pages.