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Flights from Heraklion to Santorini

Find cheap airlines flights from Heraklion to Santorini

You can choose from 1 airlines that fly from Heraklion to Santorini, including AEGEAN, AEGEAN has lowest fares on this route.
AEGEAN logo AEGEAN
Airlines are determined based on actual purchased flight tickets from Heraklion to Santorini according to previous 12 months data from Trip.com.

Book direct flights from Heraklion to Santorini: One way flights from $38, round trip flights from $114. Find flight deals for the next 3 months below.

      • Cheapest nonstop
        HER 4:30 PM
        45m
        Nonstop
        JTR 5:15 PM
        Heraklion - Santorini | Wed, Jul 22 | AEGEAN
        JTR 5:35 PM
        45m
        Nonstop
        HER 6:20 PM
        Santorini - Heraklion | Fri, Jul 24 | AEGEAN
        $114 $147
        22% off
        22% off
        $147 $114
      • HER 4:20 PM
        40m
        Nonstop
        JTR 5:00 PM
        Heraklion - Santorini | Fri, Jul 24 | AEGEAN
        JTR 6:00 PM
        40m
        Nonstop
        HER 6:40 PM
        Santorini - Heraklion | Wed, Jul 29 | AEGEAN
        $117 $147
        20% off
        20% off
        $147 $117
      • HER 4:20 PM
        40m
        Nonstop
        JTR 5:00 PM
        Heraklion - Santorini | Sun, Jul 5 | AEGEAN
        JTR 6:00 PM
        40m
        Nonstop
        HER 6:40 PM
        Santorini - Heraklion | Wed, Jul 8 | AEGEAN
        $119 $147
        19% off
        19% off
        $147 $119
      • HER 4:30 PM
        45m
        Nonstop
        JTR 5:15 PM
        Heraklion - Santorini | Wed, Jul 8 | AEGEAN
        JTR 5:35 PM
        40m
        Nonstop
        HER 6:15 PM
        Santorini - Heraklion | Sun, Jul 12 | AEGEAN
        $121
        18% off
        $147 $121
      • HER 4:20 PM
        40m
        Nonstop
        JTR 5:00 PM
        Heraklion - Santorini | Fri, Jul 10 | AEGEAN
        JTR 5:35 PM
        45m
        Nonstop
        HER 6:20 PM
        Santorini - Heraklion | Fri, Jul 17 | AEGEAN
        $122
        17% off
        $147 $122
      • HER 4:20 PM
        40m
        Nonstop
        JTR 5:00 PM
        Heraklion - Santorini | Fri, Jun 19 | AEGEAN
        JTR 4:55 PM
        40m
        Nonstop
        HER 5:35 PM
        Santorini - Heraklion | Sun, Jun 21 | AEGEAN
        $123
        16% off
        $147 $123
      • HER 4:20 PM
        40m
        Nonstop
        JTR 5:00 PM
        Heraklion - Santorini | Fri, Jul 17 | AEGEAN
        JTR 5:35 PM
        40m
        Nonstop
        HER 6:15 PM
        Santorini - Heraklion | Sun, Jul 19 | AEGEAN
        $132
        10% off
        $147 $132
      • HER 4:30 PM
        45m
        Nonstop
        JTR 5:15 PM
        Heraklion - Santorini | Wed, Jul 15 | AEGEAN
        JTR 5:35 PM
        40m
        Nonstop
        HER 6:15 PM
        Santorini - Heraklion | Sun, Jul 19 | AEGEAN
        $132
        10% off
        $147 $132
      • HER 4:20 PM
        40m
        Nonstop
        JTR 5:00 PM
        Heraklion - Santorini | Sun, Jul 12 | AEGEAN
        JTR 6:00 PM
        40m
        Nonstop
        HER 6:40 PM
        Santorini - Heraklion | Wed, Jul 15 | AEGEAN
        $132
        10% off
        $147 $132
      • HER 3:50 PM
        40m
        Nonstop
        JTR 4:30 PM
        Heraklion - Santorini | Sun, Jun 21 | AEGEAN
        JTR 6:00 PM
        40m
        Nonstop
        HER 6:40 PM
        Santorini - Heraklion | Wed, Jun 24 | AEGEAN
        $133
        10% off
        $147 $133
      • HER 1:00 PM
        17h 25m
        1 stop
        JTR 2:00 PM
        Heraklion - Santorini | Fri, Jun 19 | Normal Airline
        JTR 3:00 PM
        6h
        Nonstop
        HER 4:00 PM
        Santorini - Heraklion | Sun, Jun 21 | Normal Airline
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      • Cheapest nonstop
        HER 4:20 PM
        40m
        Nonstop
        JTR 5:00 PM
        Heraklion - Santorini | Thu, Jul 23 | AEGEAN
        $38 $71
        46% off
        46% off
        $71 $38
      • HER 4:20 PM
        40m
        Nonstop
        JTR 5:00 PM
        Heraklion - Santorini | Thu, Jul 9 | AEGEAN
        $39 $71
        45% off
        45% off
        $71 $39
      • HER 4:30 PM
        45m
        Nonstop
        JTR 5:15 PM
        Heraklion - Santorini | Tue, Jul 14 | AEGEAN
        $48 $71
        32% off
        32% off
        $71 $48
      • HER 4:20 PM
        40m
        Nonstop
        JTR 5:00 PM
        Heraklion - Santorini | Sat, Jul 4 | AEGEAN
        $50
        30% off
        $71 $50
      • HER 4:20 PM
        40m
        Nonstop
        JTR 5:00 PM
        Heraklion - Santorini | Thu, Jul 2 | AEGEAN
        $63
        11% off
        $71 $63
      • HER 4:30 PM
        45m
        Nonstop
        JTR 5:15 PM
        Heraklion - Santorini | Tue, Jul 28 | AEGEAN
        $64
        10% off
        $71 $64
      • HER 3:50 PM
        40m
        Nonstop
        JTR 4:30 PM
        Heraklion - Santorini | Sat, Jun 20 | AEGEAN
        $64
        10% off
        $71 $64
      • HER 10:25 PM
        24h 50m
        1 stop
        JTR 11:15 PM
        Heraklion - Santorini | Fri, Jul 3 | SKY express
        $59
        17% off
        $71 $59
      • HER 10:40 AM
        12h 15m
        1 stop
        JTR 10:55 PM
        Heraklion - Santorini | Thu, Jul 9 | SKY express
        $63
        11% off
        $71 $63
      • HER 10:45 PM
        24h 10m
        1 stop
        JTR 10:55 PM
        Heraklion - Santorini | Wed, Jul 1 | SKY express
        $63
        11% off
        $71 $63
      • HER 1:00 PM
        17h 25m
        1 stop
        JTR 2:00 PM
        Heraklion - Santorini | Fri, Jun 19 | Normal Airline
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Displayed flight fares from Heraklion to Santorini are based on average prices across airlines for the next 3 months, according to the latest Trip.com database.

Flight Info | Heraklion to Santorini

The distance between Heraklion and Santorini is approximately 120.85 km. It takes around 40 minutes on average to fly from Heraklion to Santorini. Based on Trip.com's data travel demand peaks in July. The off-season for travel is November.

Cheapest one-way flight price$38
Cheapest round-trip ticket price$114
Off-season for travelNovember
Peak season for travelJuly
Flight distance120.85 km
Average flight time40 minutes
Popular airlineAEGEAN
Flight statistics for the Heraklion–Santorini route are based on aggregated booking data from Trip.com over the past 12 months.

Frequently Asked Questions

  • What are the cheapest flights from Heraklion to Santorini (HER-JTR)?

    Based on Trip.com data, AEGEAN offers one-way fares as low as $38 on Cheapest nonstop routes (e.g. HER to JTR on Thu, Jul 23), while AEGEAN offers Cheapest nonstop round-trips from $114 departing on Wed, Jul 22 and returning on Fri, Jul 24.
  • At the moment, several airlines serve connecting flights from Heraklion to Santorini, including: AEGEAN Selected airlines are based on historical data collected from flight bookings made by users on Trip.com within the last 90 days.
  • It takes around 40 minutes to fly from Heraklion (HER) to Santorini (JTR).
  • By analyzing data from all airlines on the Trip.com flight calendar, it looks like the best time to book a flight from Heraklion to Santorini is around 40 days (6 weeks) in advance, and the best time to fly is usually on Tuesday, Wednesday, and Saturday. Tuesday typically offers the cheapest flights for departure, while Saturday offers the best return deals.
  • Based on Trip.com data in the past 4 weeks, there is 3 flight per week flying from Heraklion to Santorini. You can check the weekly schedule for popular airlines on this route below: AEGEAN: -/M/-/W/-/F/- -- A3196 (16:32)
  • To find best deals on flights from Heraklion to Santorini, you can use various tools on Trip.com:
    · Be flexible with your travel dates to get the cheapest flight deal. Now the cheapest flight deal is on Thu, Jul 23, with one-way flights priced at just $38.
    · Compare airlines strategically. Budget carriers often provide the lowest base fares, while we found the most affordable airline currently operating on this route is AEGEAN.
    · Set up price alerts to easily monitor ticket prices without having to check every day.
    · Check Trip.com flight deals and promo codes frequently.
    · Avoid peak season unless you book very early. It seems the peak season for Santorini travel is around July.
    · Get exclusive promo codes for Trip.com app users.
  • The cheapest months to fly from Heraklion to Santorini is November, when demand for travel is lower.
  • After crunching the numbers on our June flight calendar, it's currently cheapest to fly from Heraklion to Santorini on June 27, 2026 with AEGEAN, with prices starting at $54.
  • You can land at any one of the following hubs in Santorini, with Heraklion International Airport N. Kazantzakis to Santorini Airport (HER-JTR) is by far the most common option on this route: Santorini Airport (JTR).
  • The time difference between Santorini and Heraklion is 0h.
  • Tickets can only be changed or canceled if permitted by airline policy. To submit a change or cancellation request, go to the flight bookings page, select the option to change or cancel your booking, choose the relevant passengers and segment, and submit a request. Please note that additional charges may apply according to the airline ticket policy. However, if the flight has been rescheduled and you would like to change or cancel your ticket, you can submit an involuntary cancellation request. For more details about change and cancellation policies, please check the customer support pages.

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Note: Prices shown on this page are estimated lowest price and include all taxes and fees found in the last 24 hours.

Book with no extra fees

Prices displayed in this page are all-inclusive prices (incl. taxes, fuel surcharge, civil aviation development fund, etc) with all fees confirmed before payment. Fees for luggage, meals, WLAN, or other additional services are also included as shown in the flight cards.

Real-time pricing updates

Prices, availability, and travel information on this page were updated within last 24 hours—even in real-time. The more popular the route, the more precise the data.

Change & Cancellation Policy

Trip.com displays flight cancellation and change policies for each flight ticket during the booking process, including fees and applicable conditions. Please check the following scenarios:
Voluntary cancellation/change:
To submit a change or cancellation request, go to the flight bookings page, select the option to change or cancel your booking, choose the relevant passengers and segment, and submit a request. Please note that additional charges may apply according to the airline ticket policy.
Cancellation/change due to a flight schedule change:
If the flight has been rescheduled and you would like to change or cancel your ticket, you can submit an involuntary cancellation request. For more details about change and cancellation policies, please check the customer support pages.