Trip.com
>
Flights
>
Flights to Kenya
>
Flights to Mombasa
Hotels in Mombasa
>
Flights from Juba to Mombasa

Find flight deals from Juba to Mombasa for the next 3 months. Book one way flights from $451 or round trip flights from $749.

      • JUB 8:50 AM
        6h 10m
        1 stop
        MBA 4:00 PM
        Juba - Mombasa | Wed, May 27 | Kenya Airways
        MBA 2:50 PM
        18h 10m
        1 stop
        JUB 8:00 AM
        Mombasa - Juba | Wed, Jun 3 | Kenya Airways
        $749 $1,120
        33% off
        33% off
        $1,120 $749
      • JUB 11:10 AM
        21h 10m
        1 stop
        MBA 9:20 AM
        Juba - Mombasa | Tue, May 26 | Uganda Airlines
        MBA 12:05 PM
        4h
        1 stop
        JUB 3:05 PM
        Mombasa - Juba | Sun, May 31 | Uganda Airlines
        $952 $1,120
        15% off
        15% off
        $1,120 $952
      • JUB 10:50 AM
        6h
        1 stop
        MBA 5:50 PM
        Juba - Mombasa | Tue, May 26 | Ethiopian Airlines
        MBA 12:40 PM
        28h 20m
        1 stop
        JUB 4:00 PM
        Mombasa - Juba | Sun, May 31 | Ethiopian Airlines
        $971 $1,120
        13% off
        13% off
        $1,120 $971
      • JUB 10:50 AM
        6h
        1 stop
        MBA 5:50 PM
        Juba - Mombasa | Wed, May 27 | Ethiopian Airlines
        MBA 12:40 PM
        28h 20m
        1 stop
        JUB 4:00 PM
        Mombasa - Juba | Wed, Jun 3 | Ethiopian Airlines
        $976
        13% off
        $1,120 $976
      • JUB 10:50 AM
        6h
        1 stop
        MBA 5:50 PM
        Juba - Mombasa | Sun, Jun 7 | Ethiopian Airlines
        MBA 12:40 PM
        28h 20m
        1 stop
        JUB 4:00 PM
        Mombasa - Juba | Sun, Jun 14 | Ethiopian Airlines
        $998
        11% off
        $1,120 $998
      • JUB 8:50 AM
        4h 10m
        1 stop
        MBA 2:00 PM
        Juba - Mombasa | Sun, Jun 7 | Kenya Airways
        MBA 6:45 PM
        14h 15m
        1 stop
        JUB 8:00 AM
        Mombasa - Juba | Sun, Jun 14 | Kenya Airways
        $1,019
        9% off
        $1,120 $1,019
      • JUB 1:00 PM
        17h 25m
        1 stop
        MBA 2:00 PM
        Juba - Mombasa | Wed, May 20 | Normal Airline
        MBA 3:00 PM
        6h
        Nonstop
        JUB 4:00 PM
        Mombasa - Juba | Fri, May 22 | Normal Airline
        Find more flights
        Find more flights
      • JUB 9:10 AM
        25h 40m
        1 stop
        MBA 11:50 AM
        Juba - Mombasa | Tue, Jun 23 | Uganda Airlines
        $451 $600
        25% off
        25% off
        $600 $451
      • JUB 10:50 AM
        6h
        1 stop
        MBA 5:50 PM
        Juba - Mombasa | Thu, May 21 | Ethiopian Airlines
        $488 $600
        19% off
        19% off
        $600 $488
      • JUB 1:10 PM
        21h 40m
        1 stop
        MBA 11:50 AM
        Juba - Mombasa | Thu, May 21 | Uganda Airlines
        $495 $600
        18% off
        18% off
        $600 $495
      • JUB 9:10 AM
        25h 40m
        1 stop
        MBA 11:50 AM
        Juba - Mombasa | Tue, May 19 | Uganda Airlines
        $505
        16% off
        $600 $505
      • JUB 8:50 AM
        10h 25m
        1 stop
        MBA 8:15 PM
        Juba - Mombasa | Mon, May 25 | Kenya Airways
        $541
        10% off
        $600 $541
      • JUB 8:50 AM
        9h 40m
        1 stop
        MBA 7:30 PM
        Juba - Mombasa | Wed, May 27 | Kenya Airways
        $542
        10% off
        $600 $542
      • JUB 8:50 AM
        7h 55m
        1 stop
        MBA 5:45 PM
        Juba - Mombasa | Fri, May 29 | Kenya Airways
        $542
        10% off
        $600 $542
      • JUB 8:50 AM
        8h 30m
        1 stop
        MBA 6:20 PM
        Juba - Mombasa | Tue, Jun 9 | Kenya Airways
        $545
        9% off
        $600 $545
      • JUB 8:50 AM
        6h 20m
        1 stop
        MBA 4:10 PM
        Juba - Mombasa | Wed, Jun 10 | Kenya Airways
        $545
        9% off
        $600 $545
      • JUB 10:50 AM
        6h
        1 stop
        MBA 5:50 PM
        Juba - Mombasa | Tue, Jun 23 | Ethiopian Airlines
        $546
        9% off
        $600 $546
      • JUB 1:00 PM
        17h 25m
        1 stop
        MBA 2:00 PM
        Juba - Mombasa | Wed, May 20 | Normal Airline
        Find more flights
        Find more flights

Displayed flight fares from Juba to Mombasa are based on average prices across airlines for the next 3 months, according to the latest Trip.com database.

Frequently Asked Questions

  • What are the cheapest flights from Juba to Mombasa (JUB-MBA)?

    Based on Trip.com data, Uganda Airlines offers one-way fares as low as $451 on Cheapest nonstop routes (e.g. JUB to MBA on Tue, Jun 23), while Kenya Airways offers Cheapest nonstop round-trips from $749 departing on Wed, May 27 and returning on Wed, Jun 3.
  • At the moment, several airlines serve connecting flights from Juba to Mombasa, including: Ethiopian Airlines Selected airlines are based on historical data collected from flight bookings made by users on Trip.com within the last 90 days.
  • By analyzing data from all airlines on the Trip.com flight calendar, it looks like the best time to book a flight from Juba to Mombasa is around 40 days (6 weeks) in advance, and the best time to fly is usually on Tuesday, Wednesday, and Saturday. Tuesday typically offers the cheapest flights for departure, while Saturday offers the best return deals.
  • To find best deals on flights from Juba to Mombasa, you can use various tools on Trip.com:
    · Be flexible with your travel dates to get the cheapest flight deal. Now the cheapest flight deal is on Tue, Jun 23, with one-way flights priced at just $451.
    · Compare airlines strategically. Budget carriers often provide the lowest base fares, while we found the most affordable airline currently operating on this route is Uganda Airlines.
    · Set up price alerts to easily monitor ticket prices without having to check every day.
    · Check Trip.com flight deals and promo codes frequently.
    · Avoid peak season unless you book very early. It seems the peak season for Mombasa travel is around December.
    · Get exclusive promo codes for Trip.com app users.
  • The cheapest months to fly from Juba to Mombasa is September, when demand for travel is lower.
  • After crunching the numbers on our May flight calendar, it's currently cheapest to fly from Juba to Mombasa on May 18, 2026 with Kenya Airways, with prices starting at $645.
  • You can land at any one of the following hubs in Mombasa, with Juba International Airport to Moi International Airport (JUB-MBA) is by far the most common option on this route: Moi International Airport (MBA).
  • The time difference between Mombasa and Juba is 1h.
  • Tickets can only be changed or canceled if permitted by airline policy. To submit a change or cancellation request, go to the flight bookings page, select the option to change or cancel your booking, choose the relevant passengers and segment, and submit a request. Please note that additional charges may apply according to the airline ticket policy. However, if the flight has been rescheduled and you would like to change or cancel your ticket, you can submit an involuntary cancellation request. For more details about change and cancellation policies, please check the customer support pages.

Explore More Popular Flights

Note: Prices shown on this page are estimated lowest price and include all taxes and fees found in the last 24 hours.

Book with no extra fees

Prices displayed in this page are all-inclusive prices (incl. taxes, fuel surcharge, civil aviation development fund, etc) with all fees confirmed before payment. Fees for luggage, meals, WLAN, or other additional services are also included as shown in the flight cards.

Real-time pricing updates

Prices, availability, and travel information on this page were updated within last 24 hours—even in real-time. The more popular the route, the more precise the data.

Change & Cancellation Policy

Trip.com displays flight cancellation and change policies for each flight ticket during the booking process, including fees and applicable conditions. Please check the following scenarios:
Voluntary cancellation/change:
To submit a change or cancellation request, go to the flight bookings page, select the option to change or cancel your booking, choose the relevant passengers and segment, and submit a request. Please note that additional charges may apply according to the airline ticket policy.
Cancellation/change due to a flight schedule change:
If the flight has been rescheduled and you would like to change or cancel your ticket, you can submit an involuntary cancellation request. For more details about change and cancellation policies, please check the customer support pages.